Tracking clicks on links in HTML emails for the emails report

I currently make my emails using HTML and paste them into the builder to create templates for my team to use. I have noticed that Infusionsoft doesn’t automatically convert my hyperlinks into a tracked link, so I was wondering how to track the clicks on these links in the infusionsoft email report? I know if I use the builder it will do this for me, but I want to know how to create the links to put into my html code that will track in the same email report.